inferSV: Infer surrogate variables

In bedapub/ribiosNGS: Utilities for next-generation sequencing data analysis in ribios

Infer surrogate variables

Description

Infer surrogate variables

Usage

inferSV(object, design, ...)

## S4 method for signature 'matrix,matrix'
inferSV(object, design, ...)

## S4 method for signature 'DGEList,matrix'
inferSV(object, design, ...)

## S4 method for signature 'DGEList,formula'
inferSV(object, design, ...)

Arguments

object	An object
design	Design matrix or formula
...	Other parameters

Methods (by class)

• inferSV(object = matrix, design = matrix): method for matrix as input

• inferSV(object = DGEList, design = matrix): method for voom-transformed DGEList and design matrix as input

• inferSV(object = DGEList, design = formula): method for voom-transformed DGEList and formula as input

bedapub/ribiosNGS documentation built on Feb. 10, 2025, 12:34 a.m.