prcomp.DGEListList: Run principal component analysis on a DGEListList object
In bedapub/ribiosNGS: Utilities for next-generation sequencing data analysis in ribios
prcomp.DGEListList R Documentation
Run principal component analysis on a DGEListList object
Description
Run principal component analysis on a DGEListList object
Usage
## S3 method for class 'DGEListList'
prcomp(x, ntop = NULL, fun = function(x) cpm(x, log = TRUE))
Arguments
x
A DGEListList object
ntop
NULL or integer. If set, only ntop top-variable genes are
used
fun
Function, used to transform count data into continuous data used
by PCA
Value
A list of prcomp objects.
bedapub/ribiosNGS documentation built on Feb. 10, 2025, 12:34 a.m.
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| prcomp.DGEListList | R Documentation |
Run principal component analysis on a DGEListList object
Description
Run principal component analysis on a DGEListList object
Usage
## S3 method for class 'DGEListList'
prcomp(x, ntop = NULL, fun = function(x) cpm(x, log = TRUE))
Arguments
x |
A |
ntop |
NULL or integer. If set, only |
fun |
Function, used to transform count data into continuous data used by PCA |
Value
A list of prcomp objects.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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