readBiokitPhenodata: Read Biokit phenodata
In bedapub/ribiosNGS: Utilities for next-generation sequencing data analysis in ribios
View source: R/readBiokitAsDGEList.R
readBiokitPhenodata R Documentation
Read Biokit phenodata
Description
Read Biokit phenodata
Usage
readBiokitPhenodata(dir)
Arguments
dir
Character string, Biokit output directory
Value
A data.frame with sample annotation in columns, and sample
names (identical as the names in gct files, character strings) are row
names. Nmes of the first three columns are fixed:
-
SampleName, SampleID and group concatenated by
underscore
-
SampleID
-
group
The function depends on the annot/phenoData.meta file in the biokit
output directory.
bedapub/ribiosNGS documentation built on Feb. 10, 2025, 12:34 a.m.
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Note that we can't provide technical support on individual packages. You should contact the package authors for that.
View source: R/readBiokitAsDGEList.R
| readBiokitPhenodata | R Documentation |
Read Biokit phenodata
Description
Read Biokit phenodata
Usage
readBiokitPhenodata(dir)
Arguments
dir |
Character string, Biokit output directory |
Value
A data.frame with sample annotation in columns, and sample
names (identical as the names in gct files, character strings) are row
names. Nmes of the first three columns are fixed:
-
SampleName,SampleIDandgroupconcatenated by underscore -
SampleID -
group
The function depends on the annot/phenoData.meta file in the biokit
output directory.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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