readMolPhenCoverageGct: Read molecular phenotyping coverage file

View source: R/mps-io.R

readMolPhenCoverageGctR Documentation

Read molecular phenotyping coverage file

Description

Read molecular phenotyping coverage file

Usage

readMolPhenCoverageGct(file)

Arguments

file

Character string, a coverage GCT file of a molecular phenotyping experiment.

Value

A list of two elements: coverage, which represents the coverage matrix, and genes, which represents feature annotation.

Examples

mpsCov <- readMolPhenCoverageGct(system.file(file.path("extdata",
    "AmpliSeq_files",
    "MolPhen-coverage-example-20200115.gct"), 
  package="ribiosNGS"))

bedapub/ribiosNGS documentation built on Feb. 10, 2025, 12:34 a.m.