sigGeneIdentifiers: Return gene identifiers of significant DGEs

In bedapub/ribiosNGS: Utilities for next-generation sequencing data analysis in ribios

Return gene identifiers of significant DGEs

Description

Return gene identifiers of significant DGEs

Usage

sigGeneIdentifiers(dgeResult, contrast, sigFunc = isSig, value = NULL)

Arguments

dgeResult	An DgeResult object.
contrast	A character string, a contrast of interest.
sigFunc	A function, defining the type of significant genes.
value	NULL or character string, if not NULL, it must be a column name in the feature annotation data.

Value

A vector of character strings indicating the gene identifiers that are significantly regulated. If no defined types are found, either rownames or the first column is returned

See Also

geneIdentifierTypes

bedapub/ribiosNGS documentation built on Feb. 10, 2025, 12:34 a.m.