sigGenes: Return significantly regulated genes of all contrasts

In bedapub/ribiosNGS: Utilities for next-generation sequencing data analysis in ribios

Return significantly regulated genes of all contrasts

Description

Return significantly regulated genes of all contrasts

Usage

sigGenes(countDgeResult, value = NULL)

sigPosGenes(countDgeResult, value = NULL)

sigNegGenes(countDgeResult, value = NULL)

Arguments

countDgeResult	An EdgeResult object
value	NULL or character string, if not NULL, it must be a column name in the feature annotation data.

Value

A list of vectors of identifiers

Functions

• sigPosGenes(): Only return significantly positively regulated genes

• sigNegGenes(): Only return significantly negatively regulated genes

Note

TODO fix: add InputFeature

bedapub/ribiosNGS documentation built on Feb. 10, 2025, 12:34 a.m.