topDgeExpression: Return raw expression of top differentially expressed genes...

In bedapub/ribiosNGS: Utilities for next-generation sequencing data analysis in ribios

Return raw expression of top differentially expressed genes of multiple contrasts

Description

Return raw expression of top differentially expressed genes of multiple contrasts

Usage

topDgeExpression(
  edgeResult,
  ntop = 10,
  contrast = NULL,
  exprsFun = function(dgeList) cpm(dgeList, log = TRUE)
)

Arguments

edgeResult	An EdgeResult object.
ntop	Integer, number of top differentially expressed genes.
contrast	NULL, which means all contrasts are considered, or a vector of character strings or of integer values, which specify which contrasts are considered.
exprsFun	A function to derive expression values from EdgeResult.

Value

A tibble object with Contrast in the first column and a wide table of raw expression, feature annotation, and sample annotations in the rest columns

See Also

topDgeExpressionByContrast

bedapub/ribiosNGS documentation built on Feb. 10, 2025, 12:34 a.m.