topDgeExpressionByContrast: Return raw expression of top differentially expressed genes...
In bedapub/ribiosNGS: Utilities for next-generation sequencing data analysis in ribios
View source: R/topDgeExpression.R
topDgeExpressionByContrast R Documentation
Return raw expression of top differentially expressed genes of one contrast
Description
Return raw expression of top differentially expressed genes of one contrast
Usage
topDgeExpressionByContrast(
edgeResult,
ntop = 10,
contrast,
exprsFun = function(dgeList) cpm(dgeList, log = TRUE)
)
Arguments
edgeResult
An EdgeResult object.
ntop
Integer, number of top differentially expressed genes.
contrast
A character string or an integer value, specifying which
contrast is considered.
exprsFun
A function to derive expression values from EdgeResult.
Value
A tibble object with Contrast in the first column and
a wide table of raw expression, feature annotation, and sample annotations
in the rest columns
bedapub/ribiosNGS documentation built on Feb. 10, 2025, 12:34 a.m.
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View source: R/topDgeExpression.R
| topDgeExpressionByContrast | R Documentation |
Return raw expression of top differentially expressed genes of one contrast
Description
Return raw expression of top differentially expressed genes of one contrast
Usage
topDgeExpressionByContrast(
edgeResult,
ntop = 10,
contrast,
exprsFun = function(dgeList) cpm(dgeList, log = TRUE)
)
Arguments
edgeResult |
An |
ntop |
Integer, number of top differentially expressed genes. |
contrast |
A character string or an integer value, specifying which contrast is considered. |
exprsFun |
A function to derive expression values from |
Value
A tibble object with Contrast in the first column and
a wide table of raw expression, feature annotation, and sample annotations
in the rest columns
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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