update.SigFilter: Update SigFilter

In bedapub/ribiosNGS: Utilities for next-generation sequencing data analysis in ribios

Update SigFilter

Description

Update SigFilter

Usage

posLogFC(object) <- value

negLogFC(object) <- value

logFC(object) <- value

pValue(object) <- value

FDR(object) <- value

logCPM(object) <- value

aveExpr(object) <- value

## S3 method for class 'SigFilter'
update(object, logFC, posLogFC, negLogFC, pValue, FDR, ...)

Arguments

object	An SigFilter object
value	Numeric, vssigned threshold value
logFC	Numeric, logFC filter value, optional.
posLogFC	Numeric, positive logFC filter value, optional.
negLogFC	Numeric, negative logFC filter value, optional.
pValue	Numeric, pValue filter value, optional
FDR	Numeric, FDR filter value, optional
...	not used now

Value

An updated SigFilter object.

Functions

• posLogFC(object) <- value: Updates the posLogFC threshold value

• negLogFC(object) <- value: Updates the negLogFC threshold value

• logFC(object) <- value: Updates the posLogFC threshold value

• pValue(object) <- value: Updates the pValue threshold value

• FDR(object) <- value: Updates the FDR threshold value

• logCPM(object) <- value: Updates the logCPM threshold value

• aveExpr(object) <- value: Updates the aveExpr threshold value

bedapub/ribiosNGS documentation built on Feb. 10, 2025, 12:34 a.m.