volcanoPlot: Volcano plot

In bedapub/ribiosNGS: Utilities for next-generation sequencing data analysis in ribios

Volcano plot

Description

Volcano plot

Usage

volcanoPlot(object, ...)

## S4 method for signature 'EdgeResult'
volcanoPlot(
  object,
  contrast = NULL,
  freeRelation = FALSE,
  colramp = ribiosPlot::heat,
  multipage = FALSE,
  yValue = c("PValue", "FDR"),
  xlim = NULL,
  ylim = NULL,
  main = NULL,
  topLabel = NULL,
  labelType = NULL,
  ...
)

Arguments

object	An object
...	Other parameters
contrast	Character, contrast of interest. If NULL, all contrasts are used
freeRelation	Logical.
colramp	Function, color palette.
multipage	Logical.
yValue	Character string, either PValue or FDR.
xlim	NULL or a numeric vector of two
ylim	NULL or a numeric vector of two.
main	Character, title.
topLabel	NULL or an integer number, number of top features to be labelled
labelType	NULL or a character string, a column name in the feature annotation

Methods (by class)

• volcanoPlot(EdgeResult): Method for EdgeResult

bedapub/ribiosNGS documentation built on Feb. 10, 2025, 12:34 a.m.