Files in belleau/methylInheritanceSim
Simulating Whole-Genome Inherited Bisulphite Sequencing Data
.travis.yml
DESCRIPTION
NAMESPACE
R/methInheritSim.R
R/methylInheritanceSimInternalMethods.R
R/methylInheritanceSimMethodsNew.R
README
README.md
data/dataSimExample.RData
data/samplesForChrSynthetic.RData
inst/CITATION
inst/NEWS
inst/unitTests/test_methylInheritanceSimInternalMethods.R
inst/unitTests/test_methylInheritanceSimMethods.R
man/calculateNbDiffCase.Rd
man/createSampleID.Rd
man/dataSimExample.Rd
man/estBetaAlpha.Rd
man/estBetaBeta.Rd
man/fixSeed.Rd
man/getDiffCase.Rd
man/getDiffMeth.Rd
man/getSim.Rd
man/getSyntheticChr.Rd
man/methInheritSim-package.Rd
man/runOnEachSynCHR.Rd
man/runSim.Rd
man/samplesForChrSynthetic.Rd
man/saveData.Rd
man/simEachGeneration.Rd
man/simInheritance.Rd
man/testIfAlreadyDone.Rd
man/validateRunSimDoubleParameters.Rd
man/validateRunSimIntegerParameters.Rd
man/validateRunSimLogicalParameters.Rd
man/validateRunSimOtherParameters.Rd
man/validateRunSimParameters.Rd
methInheritSim.Rproj
tests/runTests.R
vignettes/demo_runSim/methDiff_S1_1_3_0.9_0.8_0.5_1.rds
vignettes/demo_runSim/methDiff_S1_1_3_0.9_0.8_0.5_2.rds
vignettes/demo_runSim/methDiff_S1_1_6_0.9_0.8_0.5_1.rds
vignettes/demo_runSim/methDiff_S1_1_6_0.9_0.8_0.5_2.rds
vignettes/demo_runSim/meth_S1_1_3_0.9_0.8_0.5_1.rds
vignettes/demo_runSim/meth_S1_1_3_0.9_0.8_0.5_2.rds
vignettes/demo_runSim/meth_S1_1_6_0.9_0.8_0.5_1.rds
vignettes/demo_runSim/meth_S1_1_6_0.9_0.8_0.5_2.rds
vignettes/demo_runSim/methylGR_S1_1_3_0.9_0.8_0.5_1.rds
vignettes/demo_runSim/methylGR_S1_1_3_0.9_0.8_0.5_2.rds
vignettes/demo_runSim/methylGR_S1_1_6_0.9_0.8_0.5_1.rds
vignettes/demo_runSim/methylGR_S1_1_6_0.9_0.8_0.5_2.rds
vignettes/demo_runSim/methylObj_S1_1_3_0.9_0.8_0.5_1.rds
vignettes/demo_runSim/methylObj_S1_1_3_0.9_0.8_0.5_2.rds
vignettes/demo_runSim/methylObj_S1_1_6_0.9_0.8_0.5_1.rds
vignettes/demo_runSim/methylObj_S1_1_6_0.9_0.8_0.5_2.rds
vignettes/demo_runSim/simData_S1_1_3_0.9_0.8_0.5_1.rds
vignettes/demo_runSim/simData_S1_1_3_0.9_0.8_0.5_2.rds
vignettes/demo_runSim/simData_S1_1_6_0.9_0.8_0.5_1.rds
vignettes/demo_runSim/simData_S1_1_6_0.9_0.8_0.5_2.rds
vignettes/demo_runSim/stateDiff_S1_1_3_0.9_0.8_0.5_1.rds
vignettes/demo_runSim/stateDiff_S1_1_3_0.9_0.8_0.5_2.rds
vignettes/demo_runSim/stateDiff_S1_1_6_0.9_0.8_0.5_1.rds
vignettes/demo_runSim/stateDiff_S1_1_6_0.9_0.8_0.5_2.rds
vignettes/demo_runSim/syntheticChr_S1_1.rds
vignettes/demo_runSim/treatment_S1_1_3.rds
vignettes/demo_runSim/treatment_S1_1_6.rds
vignettes/methInheritSim.Rmd
vignettes/syntheticChr.png
