API for benilton/crlmm-release
Genotype Calling (CRLMM) and Copy Number Analysis tool for Affymetrix SNP 5.0 and 6.0 and Illumina arrays.
| Global functions | |
|---|---|
| ABpanel | Man page |
| BafLrrSetList | Man page |
| BafLrrSetList,CNSet-method | Man page |
| CA | Man page |
| CA,CNSet-method | Man page |
| CB | Man page |
| CB,CNSet-method | Man page |
| Ns | Man page |
| Ns,AssayData-method | Man page |
| Ns,CNSet-method | Man page |
| OligoSetList | Man page |
| OligoSetList,CNSet-method | Man page |
| PredictionRegion-class | Man page |
| [,PredictionRegion,ANY,ANY,ANY-method | Man page |
| calculateRBaf | Man page |
| calculateRBaf,CNSet-method | Man page |
| celDates | Man page |
| cnSetExample | Man page |
| cnSetExample2 | Man page |
| cnrmaAffy | Man page |
| coerce,CNSet,oligoSnpSet-method | Man page |
| constructAffyCNSet | Man page |
| constructInf | Man page |
| corr | Man page |
| corr,AssayData-method | Man page |
| corr,CNSet-method | Man page |
| crlmm | Man page |
| crlmm-package | Man page |
| crlmm2 | Man page |
| crlmmCopynumber | Man page |
| crlmmCopynumber2 | Man page |
| crlmmCopynumberLD | Man page |
| crlmmIllumina | Man page |
| crlmmIlluminaV2 | Man page |
| genotype | Man page |
| genotype.Illumina | Man page |
| genotype2 | Man page |
| genotypeAffy | Man page |
| genotypeInf | Man page |
| genotypeLD | Man page |
| genotypes | Man page |
| lines,CNSet-method | Man page |
| mads | Man page |
| mads,AssayData-method | Man page |
| mads,CNSet-method | Man page |
| medians | Man page |
| medians,AssayData-method | Man page |
| medians,CNSet-method | Man page |
| nuA | Man page |
| nuA,CNSet-method | Man page |
| nuB | Man page |
| nuB,CNSet-method | Man page |
| phiA | Man page |
| phiA,CNSet-method | Man page |
| phiB | Man page |
| phiB,CNSet-method | Man page |
| posteriorProbability | Man page |
| posteriorProbability,CNSet-method | Man page |
| predictionRegion | Man page |
| predictionRegion,CNSet,integer-method | Man page |
| preprocessInf | Man page |
| rawCopynumber | Man page |
| rawCopynumber,CNSet-method | Man page |
| readGenCallOutput | Man page |
| readIdatFiles | Man page |
| readIdatFiles2 | Man page |
| snprma | Man page |
| snprma2 | Man page |
| snprmaAffy | Man page |
| tau2 | Man page |
| tau2,AssayData-method | Man page |
| tau2,CNSet-method | Man page |
| totalCopynumber | Man page |
| totalCopynumber,CNSet-method | Man page |
| validCEL | Man page |
| validCdfNames | Man page |
| xyplot | Man page |
| xyplot,formula,CNSet-method | Man page |
