constructAffyCNSet: Construct an object of class CNSet from Affymetrix cel files

In benilton/crlmm-release: Genotype Calling (CRLMM) and Copy Number Analysis tool for Affymetrix SNP 5.0 and 6.0 and Illumina arrays.

Description

Construct a container for normalized intensities for Affymetrix cel files, referred to as a CNSet

Usage

constructAffyCNSet(filenames, sns, cdfName, batch, verbose = TRUE, genome)

Arguments

filenames	Vector of cel file names.
sns	Sample identifiers. Defaults to basename(filenames).
cdfName	Character string indicating annotation package (e.g., "genomewidesnp6Crlmm")
batch	Vector of same length as filenames indicating batch.
verbose	Logical.
genome	Character string indicating UCSC genome build (hg18 or hg19 supported)

Value

An object of class CNSet

Author(s)

R. Scharpf

benilton/crlmm-release documentation built on May 12, 2019, 10:59 a.m.