crlmm-package: Genotype Calling via CRLMM Algorithm

In benilton/crlmm-release: Genotype Calling (CRLMM) and Copy Number Analysis tool for Affymetrix SNP 5.0 and 6.0 and Illumina arrays.

Description

Faster implementation of CRLMM specific to SNP 5.0 and 6.0 arrays.

Details

Index:

crlmm-package           New implementation of the CRLMM Algorithm.
crlmm                   Genotype SNP 5.0 or 6.0 samples.
calls                   Accessor for genotype calls.
confs                   Accessor for confidences.

The 'crlmm' package reimplements the CRLMM algorithm present in the 'oligo' package. This implementation primes for efficient genotyping of samples on SNP 5.0 and SNP 6.0 Affymetrix arrays.

To use this package, the user must have additional data packages: 'genomewidesnp5Crlmm' - SNP 5.0 arrays 'genomewidesnp6Crlmm' - SNP 6.0 arrays

Author(s)

Rafael A Irizarry Maintainer: Benilton S Carvalho <[e-mail]>

References

Carvalho BS, Louis TA, Irizarry RA. Quantifying uncertainty in genotype calls. Bioinformatics. 2010 Jan 15;26(2):242-9. Epub 2009 Nov 11.

benilton/crlmm-release documentation built on May 12, 2019, 10:59 a.m.