README.md
In benilton/oligo-release: Preprocessing tools for oligonucleotide arrays.
THE OLIGO PACKAGE
The oligo package provides tools to preprocess oligonucleotide
arrays. It is designed to support all Affymetrix and NimbleGen chips and
offers tools for reading in intensity files in their native format
(Affymetrix CEL files and NimbleGen XYS files).
Installation
oligo is a BioConductor package. The recommended way to install it is
loading R and using biocLite, as shown below:
source('http://www.bioconductor.org/biocLite.R')
biocLite('oligo')
What does it offer?
oligo offers a number of tools for preprocessing:
- Data Import: Affymetrix CEL and NimbleGen XYS files;
- Background correction methods;
- Normalization methods;
- Summarization methods;
- Visualization tools;
- Quality control tools via PLMs;
Contributing
- Fork it.
- Create a branch (
git checkout -b my_contrib)
- Commit your changes (
git commit -am "My Contributions")
- Push to the branch (
git push origin my_contrib)
- Create an Issue with a link to your branch
Contact
Benilton Carvalho
AT gmail com
benilton/oligo-release documentation built on May 12, 2019, 10:59 a.m.
R Package Documentation
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We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
THE OLIGO PACKAGE
The oligo package provides tools to preprocess oligonucleotide
arrays. It is designed to support all Affymetrix and NimbleGen chips and
offers tools for reading in intensity files in their native format
(Affymetrix CEL files and NimbleGen XYS files).
Installation
oligo is a BioConductor package. The recommended way to install it is
loading R and using biocLite, as shown below:
source('http://www.bioconductor.org/biocLite.R')
biocLite('oligo')
What does it offer?
oligo offers a number of tools for preprocessing:
- Data Import: Affymetrix CEL and NimbleGen XYS files;
- Background correction methods;
- Normalization methods;
- Summarization methods;
- Visualization tools;
- Quality control tools via PLMs;
Contributing
- Fork it.
- Create a branch (
git checkout -b my_contrib) - Commit your changes (
git commit -am "My Contributions") - Push to the branch (
git push origin my_contrib) - Create an Issue with a link to your branch
Contact
Benilton Carvalho AT gmail com
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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