Files in benilton/oligo-release
Preprocessing tools for oligonucleotide arrays.

.Rinstignore
CHANGES
DESCRIPTION
NAMESPACE
R/AllGenerics.R R/functions-crlmm.R R/functions-snprma.R R/justCRLMM.R R/justSNPRMA.R R/methods-DBPDInfo.R R/methods-ExonFeatureSet.R R/methods-ExpressionFeatureSet.R R/methods-ExpressionSet.R R/methods-FeatureSet.R R/methods-GeneFeatureSet.R R/methods-HtaFeatureSet.R R/methods-LDS.R R/methods-PLMset.R R/methods-SnpCnvFeatureSet.R R/methods-SnpFeatureSet.R R/methods-TilingFeatureSet.R R/methods-background.R R/methods-genotype.R R/methods-normalization.R R/methods-snp6.R R/methods-summarization.R R/read.celfiles.R R/read.xysfiles.R R/todo-snp.R R/utils-general.R R/utils-selectors.R R/zzz.R README.md
TODO.org
cleanup
cleanup.win
inst/CITATION
inst/NEWS.Rd
inst/scripts/FrameworkPreprocessing.bib
inst/scripts/Sweave.sty
inst/scripts/getVersions.sh
inst/scripts/oligoVignette.bib
inst/scripts/primer.pdf
inst/scripts/stdHeader.in
inst/unitTests/fids_ref0.rda
inst/unitTests/gen_rma_t0.R inst/unitTests/gen_selector0.R
inst/unitTests/i0.rda
inst/unitTests/rma_ref0.rda
inst/unitTests/test_rma.R inst/unitTests/test_selector.R man/Index-methods.Rd man/IntensityMatrix-methods.Rd man/MAplot-methods.Rd man/Sequences-methods.Rd man/basecontent.Rd man/basicPLM.Rd man/basicRMA.Rd man/boxplot.Rd man/chromosome.Rd man/colors.Rd man/coordinates.Rd man/crlmm.Rd man/fitProbeLevelModel.Rd man/getAffinitySplineCoefficients.Rd man/getBaseProfile.Rd man/getContainer.Rd man/getCrlmmSummaries.Rd man/getNetAffx.Rd man/getNgsColorsInfo.Rd man/getPlatformDesign.Rd man/getProbeInfo.Rd man/hist.Rd man/image.Rd man/justSNPRMA.Rd man/list.xysfiles.Rd man/oligo-package.Rd man/oligoDefunct.Rd man/oligoPLM-class.Rd man/paCalls.Rd man/plotM-methods.Rd man/pmAllele.Rd man/pmFragmentLength.Rd man/pmPosition.Rd man/pmStrand.Rd man/preprocessTools.Rd man/probeNames.Rd man/read.celfiles.Rd man/read.xysfiles.Rd man/readSummaries.Rd man/rma-methods.Rd man/runDate.Rd man/sequenceDesignMatrix.Rd man/snprma.Rd
src/DABG.c
src/Makevars
src/Makevars.win
src/ParserGzXYS.c
src/ParserXYS.c
src/baseProfile.c
src/basecontent.c
src/chipbackground.c
src/mas5calls.c
src/rma2.c
src/rma_common.c
src/rma_common.h
src/trimmed.c
tests/doRUnit.R
vignettes/Makefile
benilton/oligo-release documentation built on May 11, 2017, 4:19 a.m.