justSNPRMA: Summarization of SNP data

Description Usage Arguments Value Examples

Description

This function implements the SNPRMA method for summarization of SNP data. It works directly with the CEL files, saving memory.

Usage

1
justSNPRMA(filenames, verbose = TRUE, phenoData = NULL, normalizeToHapmap = TRUE)

Arguments

filenames

character vector with the filenames.

verbose

logical flag for verbosity.

phenoData

a phenoData object or NULL

normalizeToHapmap

Normalize to Hapmap? Should always be TRUE, but it's kept here for future use.

Value

SnpQSet or a SnpCnvQSet, depending on the array type.

Examples

1
## snprmaResults <- justSNPRMA(list.celfiles())

benilton/oligo-release documentation built on May 12, 2019, 10:59 a.m.