chromosome2integer: Converts chromosome to integer
In benilton/oligoClassesOld: Classes for high-throughput arrays supported by oligo and crlmm
Description
Usage
Arguments
Details
Value
Author(s)
Examples
Description
Coerces character string for chromosome in the pd. annotation packages to integers
Usage
1
2
chromosome2integer(chrom)
integer2chromosome(intChrom)
Arguments
chrom
A one or 2 letter character string (e.g, "1", "X", "Y",
"MT", "XY")
intChrom
An integer vector with values 1-25 possible
Details
This is useful when sorting SNPs in an object by chromosome and
physical position – ensures that the sorting is done in the same way
for different objects.
Value
integer2chromosome returns a vector of character string
indicating the chromosome the same length
as intChrom. chromosome2integer returns a vector of
integers the same length as the number of elements in the chrom vector.
Author(s)
R. Scharpf
Examples
1
2
chromosome2integer(c(1:22, "X", "Y", "XY", "M"))
integer2chromosome(chromosome2integer(c(1:22, "X", "Y", "XY", "M")))
benilton/oligoClassesOld documentation built on May 12, 2019, 11:51 a.m.
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Description Usage Arguments Details Value Author(s) Examples
Description
Coerces character string for chromosome in the pd. annotation packages to integers
Usage
1 2 | chromosome2integer(chrom)
integer2chromosome(intChrom)
|
Arguments
chrom |
A one or 2 letter character string (e.g, "1", "X", "Y", "MT", "XY") |
intChrom |
An integer vector with values 1-25 possible |
Details
This is useful when sorting SNPs in an object by chromosome and physical position – ensures that the sorting is done in the same way for different objects.
Value
integer2chromosome returns a vector of character string
indicating the chromosome the same length
as intChrom. chromosome2integer returns a vector of
integers the same length as the number of elements in the chrom vector.
Author(s)
R. Scharpf
Examples
1 2 | chromosome2integer(c(1:22, "X", "Y", "XY", "M"))
integer2chromosome(chromosome2integer(c(1:22, "X", "Y", "XY", "M")))
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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