OtherGenomicFeatures.mES.chr10: Other Genomic Features

In benliemory/Methylphet: Base-resolution methylation patterns accurately predict transcription factor bindings in vivo

Description

Other Genomic Features include distance between the center of candidate TFBS and the nearest TSS, distance between the center of candidate TFBS and the nearest center of other candidate TFBS, average conservation score of all bases on candidate TFBS, whether the candidate TFBS is overlapping with a repetitive region, whether the candidate TFBS is overlapping with an Intron, whether the candidate TFBS is overlapping with an Exon, whether the candidate TFBS is overlapping with an TSS, whether the candidate TFBS is overlapping with an TES, whether the candidate TFBS is overlapping with an CpG.

Usage

data(OtherGenomicFeatures.mES.chr10)

Format

The format is: num [1:10973, 1:9] 0.00773 0.00873 0.0098 0.02461 0.03432 ... - attr(*, "dimnames")=List of 2 ..$ : NULL ..$ : chr [1:9] "motif.TSSdist" "motif.phastCon.score" "is.tss" "is.tes" ...

Examples

data(OtherGenomicFeatures.mES.chr10)

benliemory/Methylphet documentation built on May 12, 2019, 12:16 p.m.