peak.GR.ES.chr10: OCT4 mESC ChIP-seq Peaks

In benliemory/Methylphet: Base-resolution methylation patterns accurately predict transcription factor bindings in vivo

Description

Location information for ChIP-seq peaks. This can convert to golden standard which is required for the train data.

Usage

data(peak.GR.ES.chr10)

Format

The format is: Formal class 'GRanges' [package "GenomicRanges"] with 6 slots ..@ seqnames :Formal class 'Rle' [package "IRanges"] with 4 slots .. .. ..@ values : Factor w/ 22 levels "chr1","chr10",..: 2 .. .. ..@ lengths : int 521 .. .. ..@ elementMetadata: NULL .. .. ..@ metadata : list() ..@ ranges :Formal class 'IRanges' [package "IRanges"] with 6 slots .. .. ..@ start : int [1:521] 3134809 3557539 3796733 4181829 4488304 5731965 5970992 6012984 6056693 6091822 ... .. .. ..@ width : int [1:521] 159 159 176 256 245 267 320 168 168 159 ... .. .. ..@ NAMES : NULL .. .. ..@ elementType : chr "integer" .. .. ..@ elementMetadata: NULL .. .. ..@ metadata : list() ..@ strand :Formal class 'Rle' [package "IRanges"] with 4 slots .. .. ..@ values : Factor w/ 3 levels "+","-","*": 3 .. .. ..@ lengths : int 521 .. .. ..@ elementMetadata: NULL .. .. ..@ metadata : list() ..@ elementMetadata:Formal class 'DataFrame' [package "IRanges"] with 6 slots .. .. ..@ rownames : NULL .. .. ..@ nrows : int 521 .. .. ..@ listData : Named list() .. .. ..@ elementType : chr "ANY" .. .. ..@ elementMetadata: NULL .. .. ..@ metadata : list() ..@ seqinfo :Formal class 'Seqinfo' [package "GenomicRanges"] with 4 slots .. .. ..@ seqnames : chr [1:22] "chr1" "chr10" "chr11" "chr12" ... .. .. ..@ seqlengths : int [1:22] NA NA NA NA NA NA NA NA NA NA ... .. .. ..@ is_circular: logi [1:22] NA NA NA NA NA NA ... .. .. ..@ genome : chr [1:22] NA NA NA NA ... ..@ metadata : list()

Examples

data(peak.GR.ES.chr10)

benliemory/Methylphet documentation built on May 12, 2019, 12:16 p.m.