as.bootstrap: Create a Bootstrap Table

In bergsmat/partab: Make a Parameter Table from NONMEM Output

Description

Creates a bootstrap table.

Creates bootstrap from bootstrap.

Creates bootstrap from numeric.

Creates bootstrap from character.

Creates a bootstrap table from a PsN bootstrap results csv filepath.

Creates a bootstrap table from a modelname in Project Context.

Usage

as.bootstrap(x, ...)

## S3 method for class 'bootstrap'
as.bootstrap(x, ...)

## S3 method for class 'numeric'
as.bootstrap(x, ...)

## S3 method for class 'character'
as.bootstrap(x, ...)

## S3 method for class 'filepath'
as.bootstrap(x, skip = 28, check.names = FALSE,
  lo = "5", hi = "95", verbose = TRUE, ...)

## S3 method for class 'modelname'
as.bootstrap(x, project = if (is.null(opt)) getwd() else
  opt, opt = getOption("project"), rundir = file.path(project, x),
  pattern = "bootstrap_results.csv", bootcsv = dir(rundir, pattern =
  pattern, recursive = TRUE, full.names = TRUE), ...)

Arguments

x	object of dispatch
...	arguments to methods
skip	number of lines to skip in bootstrap_results.csv
check.names	passed to bootstrap reader
lo	the PsN bootstrap lower confidence limit (%)
hi	the PsN bootstrap upper confidence limit (%)
verbose	display messages
project	path to model directories
opt	alternative specification of project
rundir	model specific run directory
pattern	pattern to search for bootstrap file
bootcsv	path to bootstrap_results.csv or equivalent

Details

Assumes project has been identified, model directory exists, and PsN bootstrap method has been run for the model. Scavenges for the last file matching pattern.

Value

data.frame

data.frame

data.frame

data.frame

data.frame

data.frame

Methods (by class)

• bootstrap: bootstrap method

• numeric: numeric method

• character: character method

• filepath: filepath method

• modelname: modelname method

See Also

as.bootstrap.modelname

Examples

library(magrittr)
options(project = system.file('project/model',package='partab'))
1001 %>% as.bootstrap

bergsmat/partab documentation built on May 12, 2019, 3:09 p.m.