as.definitions.modelname: Create Item Definitions from Model Name

In bergsmat/partab: Make a Parameter Table from NONMEM Output

Description

Creates item definitions from a model name. Scavenges definitions optionally from the control stream and optionally from the definitions file. Optionally writes the result to the definitions file. Always returns a data.frame with at least the column 'item' but possibly no rows.

Usage

## S3 method for class 'modelname'
as.definitions(x, verbose = FALSE,
  opt = getOption("project"), project = if (is.null(opt)) getwd() else opt,
  rundir = file.path(project, x), ctlfile = file.path(rundir, paste0(x,
  ".ctl")), metafile = file.path(rundir, paste0(x, ".def")),
  fields = c("symbol", "label", "unit"), read = length(metafile) == 1,
  write = FALSE, ...)

Arguments

x	a model name (numeric or character)
verbose	set FALSE to suppress messages
opt	alternative argument for setting project
project	parent directory of model directories
rundir	specific model directory
ctlfile	path to control stream (pass length-zero argument to ignore)
metafile	path to definitions file (pass length-zero argument to ignore)
fields	metadata fields to read from control stream if no metafile
read	whether to read the definitions file
write	whether to write the definitions file
...	passed to other functions

Value

object of class definitions, or path to metafile if write = TRUE.

See Also

as.xml_document.modelname

as.bootstrap.modelname

as.nmctl.modelname

write.csv

read.csv

Examples

library(magrittr)
options(project = system.file('project/model',package='partab'))
1001 %>% as.definitions

bergsmat/partab documentation built on May 12, 2019, 3:09 p.m.