| beer.exprs | Lung adenocarcinoma microarray expression data of Beer et al.... |
| beer.survival | Survival data for Beer et al. (2002) lung adenocarcinoma... |
| customPenalized | Penalized regression using the 'penalized' R package |
| customRSF | Random Survival Forests using the 'randomSurvivalForest' R... |
| customSuperPc | Univarate shrinkage prediction in the Cox model |
| customUniCox | Univarate shrinkage prediction in the Cox model |
| gsagenesets-class | "gsagenesets" |
| gsaPathwayGmt | Retrieve pathway genesets. |
| gsaReadGmt | Read in a gene set collection from a .gmt file |
| gsaresults-class | "gsaresults" |
| gsaTranslateGmt | GSA Translate GMT |
| gsaWilcoxSurv | Gene Set Analysis GSA, experimental implementation |
| gsaWilcoxSurv-methods | General method for performing a Gene Set Analysis (GSA),... |
| plot,gsaresults-method | GSA plots |
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