gsaresults-class: "gsaresults"

Description Slots Author(s) See Also

Description

Object returned by gsaWilcoxSurv

Slots

geneset.names

character vector of gene sets names

p.values

The p-values of the gene sets, as calculated wilcoxGST from the limma package.

statistics

numeric vector giving the values of statistics that were used to rank genes in the GSA.

genesets.used

The actual gene sets used in the GSA. This includes only symbols found in X.

geneset.cluster

If the cluster option was set, this includes a factor assigning each gene set to a cluster. This is useful for combining similar gene sets.

Author(s)

Markus Riester markus@jimmy.harvard.edu, Levi Waldron lwaldron@hsph.harvard.edu,Christoph Bernau bernau@ibe.med.uni-muenchen.de

See Also

gsaWilcoxSurv


bernau/survHDExtra documentation built on May 12, 2019, 4:22 p.m.