getGenesLocations: A transcript coordinate annotation tool

In bertamiro/lpattern: Detection of scatterplots with L-shaped pattern

Description

getGenesLocations Given a vector with Gene Symbols, it will produce an object with ENTREZ ID, gene name, chromosome number, start position and end position for Homo sapiens.

Usage

getGenesLocations(geneSymbolsSEL, sortByChrom = TRUE,
  csvFileName = NULL)

Arguments

geneSymbolsSEL	vector containing Gene Symbols (unique abbreviation for the gene name) to be annotated
sortByChrom	logical; indicating if the results have to be ssorted ascending by chromosome number. Default to TRUE
csvFileName	default is NULL; if a name is given, a csv file will be written as output

Examples

## Not run: 
transcriptCoords <- getGenesLocations(rownames(selectedGenes),
csvFileName="results/coordsselectedGenes.csv")

## End(Not run)

bertamiro/lpattern documentation built on July 19, 2019, 12:56 p.m.