plotGenesMat: plotGenesMat

In bertamiro/lpattern: Detection of scatterplots with L-shaped pattern

Description

plotGenesMat wrapper function for plotting the scatterplots associated with two matrices.

Usage

plotGenesMat(mets, expres, fileName, text4Title = NULL, x1 = 1/3,
  x2 = 2/3, y1 = NULL, y2 = NULL, percY1 = 1/3, percY2 = 2/3,
  plotGrid = TRUE, logicSc = NULL)

Arguments

mets	matrix with methylation data.
expres	matrix with expression data.
fileName	name of the file used to save the results as pdf.
text4Title	NULL, name for the plot title containing the gene name and the L-shape score.
x1,	x2, Coordinates of vertical points in the X axis. Because it is expected to contain methylation values that vary between 0 and 1 the default values are 1/3 and 2/3.
y1,	y2, Coordinates of vertical points in the Y axis. Leaving them as NULL assigns them the percentiles of yVec defined by 'percY1' and 'percY2'.
percY1,	percY2 Values used to act as default for 'y1'and 'y2' when these are set to 'NULL'.
plotGrid	logical; default set to TRUE will plot gridlines on the graph.
logicSc	NULL, numeric score representing the L-shape score.

Examples

## Not run: 
plotGenesMat (mets=myMet, expres=myExpr, fileName="GenesPlots.pdf")

## End(Not run)

bertamiro/lpattern documentation built on July 19, 2019, 12:56 p.m.