plotGeneSel: plotGeneSel
In bertamiro/lpattern: Detection of scatterplots with L-shaped pattern

Description Usage Arguments Examples

View source: R/plotGeneSel.R

plotGeneSel plots points on a scatterplot with a 3x3 grid overimposed.

1 2	plotGeneSel(xMet, yExp, titleText, x1 = 1/3, x2 = 2/3, y1 = NULL, y2 = NULL, percY1 = 1/3, percY2 = 2/3, plotGrid = TRUE)

`xMet`	vector with methylation data.
`titleText`	plot title.
`x1, x2`	Coordinates of vertical points in the X axis. Because it is expected to contain methylation values that vary between 0 and 1 the default values are 1/3 and 2/3.
`y1, y2`	Coordinates of vertical points in the Y axis. Leaving them as NULL assigns them the percentiles of yVec defined by 'percY1' and 'percY2'.
`percY1, percY2`	Values used to act as default for 'y1'and 'y2' when these are set to 'NULL'
`plotGrid`	logical. Defautl to TRUE will plot gridlines over the scatterplot.
`xExp`	vector for expression data.

## Not run: 
myGene1 <-rownames(myGenes)[1]
xVec<- as.numeric(myMet[myGene1,])
yVec<-as.numeric(myExpr[myGene1,])
titleT <- paste (myGene1, "(May be GRM)")
plotGeneSel(xMet=xVec, yExp=yVec, titleText=titleT, x1=1/3, x2=2/3)

## End(Not run)