abstract_fit: Abstract model fit
In bhagwataditya/autonomics: Unified Statistical Modeling of Omics Data

abstract_fit

R Documentation

Abstract model fit

Description

Abstract model fit

Usage

abstract_fit(
  object,
  sep = guess_fitsep(fdt(object)),
  fit = fits(object),
  coef = coefs(object, fit = fit),
  significancevar = "p",
  significance = 0.05
)

Arguments

`object`	SummarizedExperiment
`sep`	string
`fit`	character vector
`coef`	character vector
`significancevar`	'p' or 'fdr'
`significance`	fraction : pvalue cutoff

Value

SummarizedExperiment

Examples

file <- system.file('extdata/atkin.metabolon.xlsx', package = 'autonomics')
object <- read_metabolon(file, fit = 'limma', coef = 't3-t0')
fdt(object)
fdt(abstract_fit(object))

bhagwataditya/autonomics documentation built on Dec. 1, 2024, 12:27 a.m.