autonomics: Unified statistal Modeling of Omics Data

.read_maxquant_proteingroups

R Documentation

Read proteingroups/phosphosites as-is

Description

Read proteingroups/phosphosites as-is

Usage

.read_maxquant_proteingroups(
  file,
  quantity = guess_maxquant_quantity(file),
  verbose = TRUE
)

.read_maxquant_phosphosites(
  file,
  profile,
  quantity = guess_maxquant_quantity(file),
  verbose = TRUE
)

Arguments

`file`	proteingroups / phosphosites file
`quantity`	string
`verbose`	TRUE / FALSE
`profile`	proteingroups file

Value

data.table

Examples

profile <- system.file('extdata/billing19.proteingroups.txt', package = 'autonomics')
fosfile <- system.file('extdata/billing19.phosphosites.txt',  package = 'autonomics')
prodt <- .read_maxquant_proteingroups(file = profile)
fosdt <- .read_maxquant_phosphosites( file = fosfile, profile = profile)

bhagwataditya/autonomics documentation built on Nov. 1, 2024, 5:47 a.m.