contrast_subgroup_cols: Row/Col contrasts

In bhagwataditya/autonomics: Unified statistal Modeling of Omics Data

Row/Col contrasts

Description

Row/Col contrasts

Usage

contrast_subgroup_cols(object, subgroupvar)

contrast_subgroup_rows(object, subgroupvar)

Arguments

object	SummarizedExperiment
subgroupvar	subgroup svar

Value

matrix

Examples

file <- system.file('extdata/atkin.metabolon.xlsx', package = 'autonomics')
object <- read_metabolon(file)
object$subgroup <- paste0(object$Diabetes, '.', object$Time)
subgroup_matrix(object, subgroupvar = 'subgroup')
contrast_subgroup_cols(object, subgroupvar = 'subgroup')
contrast_subgroup_rows(object, subgroupvar = 'subgroup')

bhagwataditya/autonomics documentation built on May 8, 2024, 8:16 p.m.