buildComboProfiles-LongTable-method: Build an assay table with selected assay profiles for drug...

In bhklab/CoreGx: Classes and Functions to Serve as the Basis for Other 'Gx' Packages

Build an assay table with selected assay profiles for drug combinations

Description

Build an assay table with selected assay profiles for drug combinations

Usage

## S4 method for signature 'LongTable'
buildComboProfiles(object, profiles)

Arguments

object	LongTable or inheriting class containing curated drug combination data.
profiles	character a vector of profile names, i.e., column names of assays.

Value

A data.table containing fields treatment1id, treatment1dose, treatment2id, treatment2dose, sampleid, which are used as keys to keep track of profiles, along with columns of selected profiles from their assays. Each ⁠*_1⁠ is the monothearpy profile of treatment 1 in the combination, and the same rule applies to treatment 2.

Examples

## Not run: 
combo_profile_1 <- buildComboProfiles(tre, c("auc", "SCORE"))
combo_profile_2 <- buildComboProfiles(tre, c("HS", "EC50", "E_inf", "ZIP"))

## End(Not run)

bhklab/CoreGx documentation built on March 14, 2024, 3:04 a.m.