checkCsetStructure: A function to verify the structure of a CoreSet

In bhklab/CoreGx: Classes and Functions to Serve as the Basis for Other 'Gx' Packages

A function to verify the structure of a CoreSet

Description

This function checks the structure of a PharamcoSet, ensuring that the correct annotations are in place and all the required slots are filled so that matching of samples and drugs can be properly done across different types of data and with other studies.

Usage

checkCsetStructure(object, plotDist = FALSE, result.dir = tempdir())

Arguments

object	A CoreSet to be verified
plotDist	Should the function also plot the distribution of molecular data?
result.dir	The path to the directory for saving the plots as a string. Defaults to this R sessions tempdir().

Value

Prints out messages whenever describing the errors found in the structure of the cSet object passed in.

Examples

checkCsetStructure(clevelandSmall_cSet)

bhklab/CoreGx documentation built on March 14, 2024, 3:04 a.m.