GSE58644: GSE58644
In bhklab/MetaGxBreast: Transcriptomic Breast Cancer Datasets
Description
Format
Details
Source
Description
ExpressionSet for the GSE58644 Dataset
Format
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experimentData(eset):
Experiment data
Experimenter name:
Laboratory:
Contact information:
Title:
URL: http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE58644
PMIDs: 25284793
No abstract available.
notes:
summary:
mapping.method:
maxRowVariance
mapping.group:
EntrezGene.ID
preprocessing:
As published by original author.
featureData(eset):
An object of class 'AnnotatedDataFrame'
featureNames: 7896756 7896759 ... 8180179 (21462 total)
varLabels: probeset gene EntrezGene.ID best_probe
varMetadata: labelDescription
Details
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assayData: 21462 features, 321 samples
Platform type:
---------------------------
Available sample meta-data:
---------------------------
sample_name:
Length Class Mode
321 character character
alt_sample_name:
Length Class Mode
321 character character
sample_type:
tumor
321
er:
negative positive NA's
70 250 1
her2:
negative positive NA's
256 58 7
tumor_size:
Min. 1st Qu. Median Mean 3rd Qu. Max.
0.600 1.600 2.100 2.354 2.600 15.000
T:
1 2 3 4 NA's
43 59 13 1 205
N:
0 1 NA's
138 151 32
age_at_initial_pathologic_diagnosis:
Min. 1st Qu. Median Mean 3rd Qu. Max.
29.00 49.00 58.00 58.82 68.00 93.00
grade:
1 2 3 NA's
26 135 159 1
dmfs_status:
norecurrence recurrence
295 26
dmfs_days:
Min. 1st Qu. Median Mean 3rd Qu. Max.
0 9496 17900 21620 33600 52590
treatment:
chemo.plus.hormono chemotherapy hormonotherapy untreated
91 29 66 10
NA's
125
chemo:
0 1 NA's
105 123 93
tamoxifen:
0 1 NA's
39 157 125
herceptin:
0 1 NA's
190 12 119
batch:
GSE58644
321
uncurated_author_metadata:
Length Class Mode
321 character character
duplicates:
Length Class Mode
321 character character
Source
http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE58644
bhklab/MetaGxBreast documentation built on April 29, 2021, 5:20 p.m.
R Package Documentation
Browse R Packages
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Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Description Format Details Source
Description
ExpressionSet for the GSE58644 Dataset
Format
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 | experimentData(eset):
Experiment data
Experimenter name:
Laboratory:
Contact information:
Title:
URL: http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE58644
PMIDs: 25284793
No abstract available.
notes:
summary:
mapping.method:
maxRowVariance
mapping.group:
EntrezGene.ID
preprocessing:
As published by original author.
featureData(eset):
An object of class 'AnnotatedDataFrame'
featureNames: 7896756 7896759 ... 8180179 (21462 total)
varLabels: probeset gene EntrezGene.ID best_probe
varMetadata: labelDescription
|
Details
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 | assayData: 21462 features, 321 samples
Platform type:
---------------------------
Available sample meta-data:
---------------------------
sample_name:
Length Class Mode
321 character character
alt_sample_name:
Length Class Mode
321 character character
sample_type:
tumor
321
er:
negative positive NA's
70 250 1
her2:
negative positive NA's
256 58 7
tumor_size:
Min. 1st Qu. Median Mean 3rd Qu. Max.
0.600 1.600 2.100 2.354 2.600 15.000
T:
1 2 3 4 NA's
43 59 13 1 205
N:
0 1 NA's
138 151 32
age_at_initial_pathologic_diagnosis:
Min. 1st Qu. Median Mean 3rd Qu. Max.
29.00 49.00 58.00 58.82 68.00 93.00
grade:
1 2 3 NA's
26 135 159 1
dmfs_status:
norecurrence recurrence
295 26
dmfs_days:
Min. 1st Qu. Median Mean 3rd Qu. Max.
0 9496 17900 21620 33600 52590
treatment:
chemo.plus.hormono chemotherapy hormonotherapy untreated
91 29 66 10
NA's
125
chemo:
0 1 NA's
105 123 93
tamoxifen:
0 1 NA's
39 157 125
herceptin:
0 1 NA's
190 12 119
batch:
GSE58644
321
uncurated_author_metadata:
Length Class Mode
321 character character
duplicates:
Length Class Mode
321 character character
|
Source
http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE58644
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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