GSE25066: GSE25066
In bhklab/MetaGxBreast: Transcriptomic Breast Cancer Datasets
Description
Format
Details
Source
Description
ExpressionSet for the GSE25066 Dataset
Format
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experimentData(eset):
Experiment data
Experimenter name:
Laboratory:
Contact information:
Title:
URL: http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE25066
PMIDs: 21558518
No abstract available.
notes:
summary:
mapping.method:
maxRowVariance
mapping.group:
EntrezGene.ID
preprocessing:
As published by original author.
featureData(eset):
An object of class 'AnnotatedDataFrame'
featureNames: 1007_s_at 1053_at ... AFFX-HUMISGF3A/M97935_MB_at
(20967 total)
varLabels: probeset gene EntrezGene.ID best_probe
varMetadata: labelDescription
Details
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assayData: 20967 features, 508 samples
Platform type:
---------------------------
Available sample meta-data:
---------------------------
sample_name:
Length Class Mode
508 character character
alt_sample_name:
Length Class Mode
508 character character
sample_type:
tumor
508
er:
negative positive NA's
205 297 6
pgr:
negative positive NA's
258 243 7
her2:
negative positive NA's
485 6 17
T:
T0 T1 T2 T3 T4
3 30 255 145 75
N:
0 1
157 351
age_at_initial_pathologic_diagnosis:
Min. 1st Qu. Median Mean 3rd Qu. Max.
24.0 42.0 49.0 49.8 58.0 75.0
grade:
1 2 3 4 NA's
32 180 259 15 22
dmfs_days:
Min. 1st Qu. Median Mean 3rd Qu. Max.
0.0 636.5 999.9 1088.0 1500.0 2717.0
dmfs_status:
norecurrence recurrence
397 111
batch:
GSE25066
508
uncurated_author_metadata:
Length Class Mode
508 character character
chemosensitivity_prediction:
Rx Insensitive Rx Sensitive
339 169
GGI_prediction:
High Low
336 172
PAM50_prediction:
Basal Her2 LumA LumB Normal
189 37 160 78 44
dlda30_prediction:
pCR RD
196 312
RCB_prediction:
RCB-0/I RCB-II/III
230 278
Source
http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE25066
bhklab/MetaGxBreast documentation built on April 29, 2021, 5:20 p.m.
R Package Documentation
Browse R Packages
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Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Description Format Details Source
Description
ExpressionSet for the GSE25066 Dataset
Format
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 | experimentData(eset):
Experiment data
Experimenter name:
Laboratory:
Contact information:
Title:
URL: http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE25066
PMIDs: 21558518
No abstract available.
notes:
summary:
mapping.method:
maxRowVariance
mapping.group:
EntrezGene.ID
preprocessing:
As published by original author.
featureData(eset):
An object of class 'AnnotatedDataFrame'
featureNames: 1007_s_at 1053_at ... AFFX-HUMISGF3A/M97935_MB_at
(20967 total)
varLabels: probeset gene EntrezGene.ID best_probe
varMetadata: labelDescription
|
Details
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 | assayData: 20967 features, 508 samples
Platform type:
---------------------------
Available sample meta-data:
---------------------------
sample_name:
Length Class Mode
508 character character
alt_sample_name:
Length Class Mode
508 character character
sample_type:
tumor
508
er:
negative positive NA's
205 297 6
pgr:
negative positive NA's
258 243 7
her2:
negative positive NA's
485 6 17
T:
T0 T1 T2 T3 T4
3 30 255 145 75
N:
0 1
157 351
age_at_initial_pathologic_diagnosis:
Min. 1st Qu. Median Mean 3rd Qu. Max.
24.0 42.0 49.0 49.8 58.0 75.0
grade:
1 2 3 4 NA's
32 180 259 15 22
dmfs_days:
Min. 1st Qu. Median Mean 3rd Qu. Max.
0.0 636.5 999.9 1088.0 1500.0 2717.0
dmfs_status:
norecurrence recurrence
397 111
batch:
GSE25066
508
uncurated_author_metadata:
Length Class Mode
508 character character
chemosensitivity_prediction:
Rx Insensitive Rx Sensitive
339 169
GGI_prediction:
High Low
336 172
PAM50_prediction:
Basal Her2 LumA LumB Normal
189 37 160 78 44
dlda30_prediction:
pCR RD
196 312
RCB_prediction:
RCB-0/I RCB-II/III
230 278
|
Source
http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE25066
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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