Description Format Details Source
ExpressionSet for the NCI Dataset
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 | experimentData(eset):
Experiment data
Experimenter name:
Laboratory:
Contact information: http://www.ncbi.nlm.nih.gov/pubmed/?term=12917485
Title:
URL: Supplemental data from paper
PMIDs: 12917485
No abstract available.
notes:
summary:
Expression patterns were strongly associated with ER status, moderately as
sociated with grade, but not associated with menopausal state, node status
, or tumor size. Genes that were significantly associated with survival we
re identified.
mapping.method:
maxRowVariance
mapping.group:
EntrezGene.ID
preprocessing:
As published by original author.
featureData(eset):
An object of class 'AnnotatedDataFrame'
featureNames: AF106966 AF217974 ... Y12473 (5154 total)
varLabels: probeset gene EntrezGene.ID best_probe
varMetadata: labelDescription
|
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 | assayData: 5154 features, 99 samples
Platform type:
---------------------------
Available sample meta-data:
---------------------------
sample_name:
Length Class Mode
99 character character
alt_sample_name:
Min. 1st Qu. Median Mean 3rd Qu. Max.
21580 21610 21640 21650 21670 21830
sample_type:
tumor
99
er:
negative positive
34 65
tumor_size:
Min. 1st Qu. Median Mean 3rd Qu. Max.
0.80 1.80 2.50 2.82 3.00 8.00
N:
0 1
46 53
age_at_initial_pathologic_diagnosis:
Min. 1st Qu. Median Mean 3rd Qu. Max.
33.00 49.00 57.00 57.47 64.50 90.00
grade:
1 2 3
16 38 45
days_to_tumor_recurrence:
Min. 1st Qu. Median Mean 3rd Qu. Max.
8 967 2057 1969 2930 4067
recurrence_status:
norecurrence recurrence
54 45
treatment:
chemotherapy hormonotherapy untreated
10 78 11
batch:
NCI
99
uncurated_author_metadata:
Length Class Mode
99 character character
|
Supplemental data from paper
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