API for bhklab/RadioGx
Analysis of Large-Scale Radio-Genomic Data

Global functions
.RadioSet	Man page
.calculateFromRaw	Source code
.convertRsetMolecularProfilesToSE	Source code
.linearQuadratic	Source code
.linearQuadraticInv	Source code
.makeGrittyGuess	Source code
.onAttach	Source code
.showSigAnnotRadioSig	Source code
.subsetToRadioSet	Source code
.summarizeMolecularNumbers	Source code
.summarizeMolecularProfilesRadioSet	Source code
.summarizePerturbationNumbers	Source code
.summarizeSensitivityNumbers	Source code
.summarizeSensitivityProfilesRadioSet	Source code
.validateRsetMolecularProfilesToSEConversion	Source code
OERmodel	Source code
RadioSet	Man page Source code
RadioSet-accessors	Man page
RadioSet-class	Man page
RadioSig	Man page Source code
[,RadioSet,ANY,ANY,ANY-method	Man page
`radiationInfo<-`	Source code
`radiationTypes<-`	Source code
annotation	Man page
annotation,RadioSet-method	Man page
annotation<-	Man page
annotation<-,RadioSet,list-method	Man page
availableRSets	Man page Source code
cellInfo	Man page
cellInfo,RadioSet-method	Man page
cellInfo<-	Man page
cellInfo<-,RadioSet,data.frame-method	Man page
cellName,RadioSet-method	Man page
cellNames	Man page
cellNames<-	Man page
cellNames<-,RadioSet,list-method	Man page
checkRSetStructure	Man page Source code
clevelandSmall	Man page
computeAUC	Man page Source code
computeD10	Man page Source code
computeSF2	Man page Source code
curation	Man page
curation,RadioSet-method	Man page
curation<-	Man page
curation<-,RadioSet,list-method	Man page
datasetType	Man page
datasetType,RadioSet-method	Man page
datasetType<-	Man page
datasetType<-,RadioSet,character-method	Man page
dateCreated	Man page
dateCreated,RadioSet-method	Man page
dateCreated<-	Man page
dateCreated<-,RadioSet,character-method	Man page
dateCreated<-,RadioSet-method	Man page
dim,RadioSet-method	Man page
doseResponseCurve	Man page Source code
downloadRSet	Man page Source code
fNames	Man page
fNames,RadioSet,character-method	Man page
fNames<-	Man page
fNames<-,RadioSet,character,character-method	Man page
featureInfo	Man page
featureInfo,RadioSet-method	Man page
featureInfo<-	Man page
featureInfo<-,RadioSet,character,DataFrame-method	Man page
featureInfo<-,RadioSet,character,data.frame-method	Man page
geneRadSensitivity	Source code
linearQuadraticModel	Man page
mDataNames	Man page
mDataNames,RadioSet-method	Man page
mDataNames<-	Man page
mDataNames<-,RadioSet,ANY-method	Man page
mDataNames<-,RadioSet-method	Man page
molecularProfiles	Man page
molecularProfiles,RadioSet-method	Man page
molecularProfiles<-	Man page
molecularProfiles<-,RadioSet,character,character,matrix-method	Man page
molecularProfiles<-,RadioSet,character,missing,matrix-method	Man page
molecularProfiles<-,RadioSet,missing,missing,MutliAssayExperimen	Man page
molecularProfiles<-,RadioSet,missing,missing,list-method	Man page
molecularProfilesSlot	Man page
molecularProfilesSlot,RadioSet-method	Man page
molecularProfilesSlot<-	Man page
molecularProfilesSlot<-,RadioSet,list-method	Man page
molecularProfilesSlot<-,RadioSet,list_OR_MAE-method	Man page
molecularProfilesSlot<-RadioSet,MultiAssayExperiment-method	Man page
moleculerProfilesSlot,RadioSet-method	Man page
name	Man page
name,RadioSet-method	Man page
name<-	Man page
name<-,RadioSet,character-method	Man page
name<-,RadioSet-method	Man page
pertNumber	Man page
pertNumber,RadioSet-method	Man page
pertNumber<-	Man page
pertNumber<-,RadioSet,array-method	Man page
phenoInfo	Man page
phenoInfo,RadioSet,character-method	Man page
phenoInfo<-	Man page
phenoInfo<-,RadioSet,character,DataFrame-method	Man page
phenoInfo<-,RadioSet,character,data.frame-method	Man page
plotCurve	Man page Source code
radSensitivitySig	Man page Source code
radiationInfo	Man page Source code
radiationInfo<-	Man page
radiationTypes	Man page Source code
radiationTypes<-	Man page
rankGeneRadSensitivity	Source code
sampleInfo	Man page
sampleInfo,RadioSet-method	Man page
sampleInfo<-	Man page
sampleInfo<-,RadioSet,data.frame-method	Man page
sampleName,RadioSet-method	Man page
sampleNames	Man page
sampleNames,RadioSet-method	Man page
sampleNames<-	Man page
sampleNames<-,RadioSet,character-method	Man page
sampleNames<-,RadioSet,list-method	Man page
sensNumber	Man page
sensNumber,RadioSet-method	Man page
sensNumber<-	Man page
sensNumber<-,RadioSet,matrix-method	Man page
sensitivityInfo,RadioSet,character-method	Man page
sensitivityInfo,RadioSet,missing-method	Man page
sensitivityInfo,RadioSet-method	Man page
sensitivityInfo<-,RadioSet,data.frame-method	Man page
sensitivityInfo<-,RadioSet,missing,data.frame-method	Man page
sensitivityMeasures,RadioSet-method	Man page
sensitivityMeasures<-,RadioSet,character-method	Man page
sensitivityProfiles,RadioSet-method	Man page
sensitivityProfiles<-,RadioSet,data.frame-method	Man page
sensitivityRaw,RadioSet-method	Man page
sensitivityRaw<-,RadioSet,array-method	Man page
sensitivitySlot	Man page
sensitivitySlot<-	Man page
sensitvityInfo<-,RadioSet,character,data.frame-method	Man page
show,RadioSet-method	Man page
show,RadioSig-method	Man page
showSigAnnot,RadioSig-method	Man page
subsetTo,RadioSet-method	Man page
summarizeMolecularProfiles,RadioSet-method	Man page
summarizeSensitivityProfiles,RadioSet-method	Man page
treamentResponse<-,RadioSet,list-method	Man page
treatmentInfo	Man page
treatmentInfo,RadioSet-method	Man page
treatmentInfo<-	Man page
treatmentInfo<-,RadioSet,data.frame-method	Man page
treatmentNames	Man page
treatmentNames,RadioSet-method	Man page
treatmentNames<-	Man page
treatmentNames<-,RadioSet,character-method	Man page
treatmentResponse	Man page
treatmentResponse,RadioSet-method	Man page
treatmentResponse<-	Man page
treatmentResponse<-,RadioSet,LongTable-method	Man page
treatmentResponse<-,RadioSet,list_OR_LongTable-method	Man page
updateMaxConc	Source code
updateObject,RadioSet-method	Man page