plotRLE: Compute and plot relative log expression (RLE) values of gene...

In bhuvad/restools: Research tools for data science projects

Compute and plot relative log expression (RLE) values of gene expression data

Description

Compute and plot relative log expression (RLE) values of gene expression data

Usage

plotRLE(edata, ordannots = c(), rl = 1, ...)

## S4 method for signature 'DGEList'
plotRLE(edata, ordannots = c(), rl = 1, ...)

## S4 method for signature 'ExpressionSet'
plotRLE(edata, ordannots = c(), rl = 1, ...)

## S4 method for signature 'SummarizedExperiment'
plotRLE(edata, ordannots = c(), rl = 1, ...)

Arguments

edata	a DGEList, SummarizedExperiment or ExpressionSet object containing gene expression data.
ordannots	variables or computations to sort samples by (tidy style).
rl	a numeric, specifying the relative scale factor to apply to text on the plot.
...	aesthetic mappings to pass to 'ggplot2::aes_string()'.

Value

a ggplot2 object, containing the RLE plot.

Examples

se = emtdata::cursons2018_se()
dge = emtdata::asDGEList(se)
plotRLE(dge, colour = Subline, lty = Treatment, lwd = 2, ordannots =
c(Subline, Treatment))

bhuvad/restools documentation built on June 16, 2024, 12:44 a.m.