readFeatureCountsRes: Read results of a Subread analysis into a DGEList object
In bhuvad/restools: Research tools for data science projects

View source: R/readAlignmentResults.R

readFeatureCountsRes

R Documentation

Read results of a Subread analysis into a DGEList object

Description

Creates a DGEList object using files from a Subread analysis. The function will look for a file called 'SraRunTable.txt' for sample annotations, a '*_counts.txt' file(s) for expression data and 'counts.txt.summary' for summary statistics (optional).

Usage

readFeatureCountsRes(fpath, plot = TRUE)

Arguments

`fpath`	a character, specifying the path of the analysis (ideally using bhuva.d's scripts).
`plot`	a logical, stating whether to plot summary statistics for the alignment or not.