API for bioDS/phyloRNA
Tools for phylogenetic analyses of scRNAseq data

Global functions
.onLoad	Source code
GATK	Man page
GATKR6	Man page
IndexedVector	Man page
abspath	Man page Source code
all_files_exist	Man page Source code
bamtagregex	Man page Source code
bamtofastq	Man page Source code
cellranger_count	Man page Source code
cellranger_mkref	Man page Source code
convert	Man page Source code
convert.data.frame	Man page Source code
convert.default	Man page Source code
convert.list	Man page Source code
convert.matrix	Man page Source code
corename	Man page Source code
densest_subset	Man page Source code
expr	Man page
expr_discretize	Man page Source code
expr_merge	Man page Source code
expr_normalize	Man page Source code
expr_quality_filter	Man page Source code
expr_read10x	Man page Source code
expr_read10xh5	Man page Source code
expr_scale	Man page Source code
expr_zero_to_na	Man page Source code
filter_gtf	Man page Source code
gatk_ApplyBQSR	Man page Source code
gatk_BaseRecalibrator	Man page Source code
gatk_BuildBamIndex	Man page Source code
gatk_CreateSomaticPanelOfNormals	Man page Source code
gatk_FilterMutectCalls	Man page Source code
gatk_FilterSamReadsTag	Man page Source code
gatk_GenomicsDBImport	Man page Source code
gatk_GetSampleName	Man page Source code
gatk_IndexFeatureFile	Man page Source code
gatk_MarkDuplicates	Man page Source code
gatk_MergeSamFiles	Man page Source code
gatk_Mutect2	Man page Source code
gatk_SortSam	Man page Source code
gatk_SplitNCigarReads	Man page Source code
gatk_make_pon	Man page Source code
gatk_mutect2	Man page
gatk_pon	Man page
gatk_prepare	Man page Source code
gatk_snv	Man page Source code
get_features	Source code
hdi	Man page Source code
is_nn	Man page Source code
missing_to_na	Man page Source code
mkdir	Man page Source code
nchardf	Source code
phyloRNA	Man page
random_string	Man page Source code
read_column	Man page Source code
read_fasta	Man page Source code
remap	Man page Source code
remove_constant	Man page Source code
replace	Man page Source code
replace.data.frame	Man page Source code
replace.default	Man page Source code
replace_ordinal	Man page Source code
seq2tab	Man page Source code
split_data	Source code
systemE	Man page Source code
tab2seq	Man page Source code
vcftools_filter	Man page Source code
vcm	Man page Source code
write_fasta	Man page Source code