read_fasta: Read fasta file
In bioDS/phyloRNA: Tools for phylogenetic analyses of scRNAseq data
Description
Usage
Arguments
Value
See Also
Examples
Description
Read a fasta file and return a named vector of sequences.
Usage
1
Arguments
file
a fasta file
Value
a named vector of sequences
See Also
write_fasta to write sequences into a fasta file
Examples
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# Construct sequences as a named vector
seq1 = as.character(1:5)
names(seq1) = letters[1:5]
# Write sequences in a fasta format
fasta = tempfile()
writeLines(paste0(">", names(seq1), "\n", seq1), fasta)
# or alternatively, write_fasta(seq1)
# Read sequences with read_fasta
seq2 = read_fasta(fasta)
identical(seq1, seq2)
bioDS/phyloRNA documentation built on Feb. 21, 2022, 3:28 p.m.
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Description Usage Arguments Value See Also Examples
Description
Read a fasta file and return a named vector of sequences.
Usage
1 |
Arguments
file |
a fasta file |
Value
a named vector of sequences
See Also
write_fasta to write sequences into a fasta file
Examples
1 2 3 4 5 6 7 8 9 10 11 12 | # Construct sequences as a named vector
seq1 = as.character(1:5)
names(seq1) = letters[1:5]
# Write sequences in a fasta format
fasta = tempfile()
writeLines(paste0(">", names(seq1), "\n", seq1), fasta)
# or alternatively, write_fasta(seq1)
# Read sequences with read_fasta
seq2 = read_fasta(fasta)
identical(seq1, seq2)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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