filter_gtf: Filter GTF file according to index file

In bioDS/phyloRNA: Tools for phylogenetic analyses of scRNAseq data

Description

Fitler an annotation GTF file according to fasta index file.

Usage

filter_gtf(gtf, fai, output = NULL)

Arguments

gtf	an input GTF file
fai	an input fasta index file
output	optional an output file. If not specified, output is derived from the fasta index file.

Details

This might be useful when filtering a GTF so that only chromosomes or scaffolds of interest are present.

This code is a thin wrapper over the Python script filter_gtf.py found in the package's inst folder.

bioDS/phyloRNA documentation built on Feb. 21, 2022, 3:28 p.m.