write_fasta: Write fasta file

In bioDS/phyloRNA: Tools for phylogenetic analyses of scRNAseq data

Description

Write a named vector of sequences to a file in a fasta format.

Usage

write_fasta(seq, file)

Arguments

seq	a named vector of sequences
file	an output file

See Also

read_fasta to read sequences from a fasta file

Examples

# Construct sequences as a named vector
seq = as.character(1:5)
names(seq) = letters[1:5]

# Write sequences to a temp file
fasta = tempfile()
write_fasta(seq, fasta)

identical(paste0(">", names(seq), "\n", seq, collapse="\n"), readLines(fasta))

bioDS/phyloRNA documentation built on Feb. 21, 2022, 3:28 p.m.