create_mofa_from_MultiAssayExperiment: create a MOFA object from a MultiAssayExperiment object

In bioFAM/MOFA2: Multi-Omics Factor Analysis v2

create a MOFA object from a MultiAssayExperiment object

Description

Method to create a MOFA object from a MultiAssayExperiment object

Usage

create_mofa_from_MultiAssayExperiment(
  mae,
  groups = NULL,
  extract_metadata = FALSE
)

Arguments

mae	a MultiAssayExperiment object
groups	a string specifying column name of the colData to use it as a group variable. Alternatively, a character vector with group assignment for every sample. Default is NULL (no group structure).
extract_metadata	logical indicating whether to incorporate the metadata from the MultiAssayExperiment object into the MOFA object

Value

Returns an untrained MOFA object

bioFAM/MOFA2 documentation built on Feb. 1, 2024, 6:41 a.m.