create_mofa_from_MultiAssayExperiment: create a MOFA object from a MultiAssayExperiment object
In bioFAM/MOFA2: Multi-Omics Factor Analysis v2

create_mofa_from_MultiAssayExperiment

R Documentation

create a MOFA object from a MultiAssayExperiment object

Method to create a MOFA object from a MultiAssayExperiment object

create_mofa_from_MultiAssayExperiment(
  mae,
  groups = NULL,
  extract_metadata = FALSE
)

`mae`	a MultiAssayExperiment object
`groups`	a string specifying column name of the colData to use it as a group variable. Alternatively, a character vector with group assignment for every sample. Default is `NULL` (no group structure).
`extract_metadata`	logical indicating whether to incorporate the metadata from the MultiAssayExperiment object into the MOFA object