get_interpolated_factors: Get interpolated factor values

In bioFAM/MOFA2: Multi-Omics Factor Analysis v2

Get interpolated factor values

Description

Extract the interpolated factor values

Usage

get_interpolated_factors(object, as.data.frame = FALSE, only_mean = FALSE)

Arguments

object	a MOFA object
as.data.frame	logical indicating whether to return data as a data.frame
only_mean	logical indicating whether include only mean or also uncertainties

Details

This can be used only if covariates are passed to the object upon creation, GP_factors is set to True and new covariates were passed for interpolation.

Value

By default, a nested list containing for each group a list with a matrix with the interpolated factor values ("mean"), their variance ("variance") and the values of the covariate at which interpolation took place ("new_values"). Alternatively, if as.data.frame is TRUE, returns a long-formatted data frame with columns containing the covariates and (factor, group, mean and variance).

bioFAM/MOFA2 documentation built on Feb. 1, 2024, 6:41 a.m.