create_mofa_from_SingleCellExperiment: create a MOFA object from a SingleCellExperiment object

In bioFAM/MOFA2: Multi-Omics Factor Analysis v2

create a MOFA object from a SingleCellExperiment object

Description

Method to create a MOFA object from a SingleCellExperiment object

Usage

create_mofa_from_SingleCellExperiment(
  sce,
  groups = NULL,
  assay = "logcounts",
  extract_metadata = FALSE
)

Arguments

sce	SingleCellExperiment object
groups	a string specifying column name of the colData to use it as a group variable. Alternatively, a character vector with group assignment for every sample. Default is NULL (no group structure).
assay	assay to use, default is logcounts.
extract_metadata	logical indicating whether to incorporate the metadata from the SingleCellExperiment object into the MOFA object

Value

Returns an untrained MOFA object

bioFAM/MOFA2 documentation built on June 12, 2024, 3:57 p.m.