get.info.top.gene: Getting information about top genes from gprogiler2

In biocsuwb/EnsembleFS-package: Ensemble feature selection methods for analysis of molecular data

Getting information about top genes from gprogiler2

Description

Getting information about top genes from gprogiler2

Usage

get.info.top.gene(gene.top, condition.methods = "union")

Arguments

gene.top	A list with top genes for each method specified in ensembleFS
condition.methods	A way to combine the best genes for further analysis obtained by different methods in ensembleFS. For part of the common intersect, for union from methods union.

Details

Getting information about top genes from gprofiler2 obtained from ensembleFS. Requires internet connection.

Value

A data.frame with gene information

Examples

## Not run: 

decisions <- data$class
data$class <- NULL

result <- ensembleFS(data,
            decisions,
            methods = c('fs.utest', 'fs.mrmr'),
            method.cv = 'kfoldcv',
            params.cv = list(k = 3, iter = 10),
            level.cor = 0.75,
            params = list(adjust = 'fdr', feature.number = 10, alpha = 0.05),
            asm = c('fs.utest', 'fs.mrmr'),
            model = c('fs.utest', 'fs.mrmr')
            )

gene.top <- get.top.gene(result$selected.feature, 15 , 20)
info.gene <- gene.info.top.gene(gene.top, condition.methods = 'union')


## End(Not run)

biocsuwb/EnsembleFS-package documentation built on Dec. 9, 2024, 5:32 p.m.