get.top.gene: Get the best genes

In biocsuwb/EnsembleFS-package: Ensemble feature selection methods for analysis of molecular data

Get the best genes

Description

Get the best genes

Usage

get.top.gene(list.imp.var.cv, level.freq, number.gene)

Arguments

list.imp.var.cv	the main genes obtained in ensembleFS
level.freq	how many times a gene has occurred in of the feature subsets
number.gene	number of genes

Details

Get the best genes out obtained in ensembleFS

Value

A list with top genes for each method specified in ensembleFS

Examples

## Not run: 

decisions <- data$class
data$class <- NULL

result <- ensembleFS(data,
            decisions,
            methods = c('fs.utest', 'fs.mrmr'),
            method.cv = 'kfoldcv',
            params.cv = list(k = 3, iter = 10),
            level.cor = 0.75,
            params = list(adjust = 'fdr', feature.number = 10, alpha = 0.05),
            asm = c('fs.utest', 'fs.mrmr'),
            model = c('fs.utest', 'fs.mrmr')
            )

gene.top <- get.top.gene(result$selected.feature, 15 , 20)


## End(Not run)

biocsuwb/EnsembleFS-package documentation built on Dec. 9, 2024, 5:32 p.m.