Man pages for bioimaginggroup/bioimagetools
Tools for Microscopy Imaging
| bwlabel3d | Binary segmentation in 3d |
| cmoments3d | Computes moments from image objects |
| cnnTest | Permutation Test for cross-type nearest neighbor distances |
| crossNN | Compute cross-type nearest neighbor distances |
| distance2border | A function to compute the distance from spots to borders of... |
| filterImage3d | Apply filter to 3D images |
| folder.choose | Choose a folder interactively |
| img | Display an image stack |
| intensity3D | Intensity of a 3d Dataset or a Model |
| K.cross.3D | K-function cross-type in 3D |
| L.cross.3D | L-function cross-type in 3d |
| mexican.hat.brush | Mexican hat brush to use with filter2 |
| nearestClassDistance | Title Find distance to next neighbour of a specific class |
| nearestClassDistances | Find all distances to next neighbor of all classes |
| nearest.neighbour.distribution | Nearest neighbor distribution (D curve) |
| outside | Segmentation of the background of 3D images based on classes |
| plotNearestClassDistances | Title Plot nearest class distances |
| readBMP | Read bitmap files |
| readClassTIF | Read TIF file with classes |
| readTIF | Read tif stacks |
| segment | Segmentation of 3D images using EM algorithms |
| segment.outside | Segmentation of the background of 3D images based on... |
| spots | Find spots based on threshold and minimum total intensity |
| standardize | Standardize images |
| table.n | Cross Tabulation and Table Creation (including empty classes) |
| testColoc | Permutation Test for cross-type nearest neighbor distances |
| writeTIF | Writes image stack into a TIFF file. Wrapper for writeTIFF |
