Tools for Microscopy Imaging

bwlabel3d | Binary segmentation in 3d |

cmoments3d | Computes moments from image objects |

cnnTest | Permutation Test for cross-type nearest neighbor distances |

crossNN | Compute cross-type nearest neighbor distances |

distance2border | A function to compute the distance from spots to borders of... |

filterImage3d | Apply filter to 3D images |

folder.choose | Choose a folder interactively |

img | Display an image stack |

intensity3D | Intensity of a 3d Dataset or a Model |

K.cross.3D | K-function cross-type in 3D |

L.cross.3D | L-function cross-type in 3d |

mexican.hat.brush | Mexican hat brush to use with filter2 |

nearestClassDistance | Title Find distance to next neighbour of a specific class |

nearestClassDistances | Find all distances to next neighbour of all classes |

nearest.neighbour.distribution | Nearest neighbour distribution (D curve) |

outside | Segmentation of the background of 3D images based on classes |

plotNearestClassDistances | Title Plot nearest class distances |

readBMP | Read bitmap files |

readClassTIF | Read TIF file with classes |

readTIF | Read tif stacks |

segment | Segmentation of 3D images using EM algorithms |

segment.outside | Segmentation of the background of 3D images based on... |

spots | Find spots based on threshold and minimum total intensity |

standardize | Standardize images |

table.n | Cross Tabulation and Table Creation (including empty classes) |

testColoc | Permutation Test for cross-type nearest neighbor distances |

writeTIF | Writes image stack into a TIFF file. Wrapper for writeTIFF |

Embedding an R snippet on your website

Add the following code to your website.

For more information on customizing the embed code, read Embedding Snippets.