Man pages for bioimaginggroup/bioimagetools
Tools for Microscopy Imaging

bwlabel3dBinary segmentation in 3d
cmoments3dComputes moments from image objects
cnnTestPermutation Test for cross-type nearest neighbor distances
crossNNCompute cross-type nearest neighbor distances
distance2borderA function to compute the distance from spots to borders of...
filterImage3dApply filter to 3D images
folder.chooseChoose a folder interactively
imgDisplay an image stack
intensity3DIntensity of a 3d Dataset or a Model
K.cross.3DK-function cross-type in 3D
L.cross.3DL-function cross-type in 3d
mexican.hat.brushMexican hat brush to use with filter2
nearestClassDistanceTitle Find distance to next neighbour of a specific class
nearestClassDistancesFind all distances to next neighbour of all classes
nearest.neighbour.distributionNearest neighbour distribution (D curve)
outsideSegmentation of the background of 3D images based on classes
plotNearestClassDistancesTitle Plot nearest class distances
readBMPRead bitmap files
readClassTIFRead TIF file with classes
readTIFRead tif stacks
segmentSegmentation of 3D images using EM algorithms
segment.outsideSegmentation of the background of 3D images based on...
spotsFind spots based on threshold and minimum total intensity
standardizeStandardize images
table.nCross Tabulation and Table Creation (including empty classes)
testColocPermutation Test for cross-type nearest neighbor distances
writeTIFWrites image stack into a TIFF file. Wrapper for writeTIFF
bioimaginggroup/bioimagetools documentation built on June 5, 2018, 4:35 p.m.