inst/Tests/run_dev_PCAModule2.R

In bioinfo-pf-curie/bioshiny-modules-library: This library aims to provide R shiny apps developers of the Institut Curie with different modules witch can be used as bricks to build bigger shiny app

.rs.api.documentSaveAll() # close and save all open file
suppressWarnings(lapply(paste('package:', names(sessionInfo()$otherPkgs), sep = ""), detach, character.only = TRUE, unload = TRUE))
rm(list = ls(all.names = TRUE))
devtools::document('.')
devtools::load_all('.')
options(app.prod = FALSE) # TRUE = production mode, FALSE = development mode
library(shiny)
import::from(shinydashboard,box, dashboardPage,dashboardSidebar,dashboardBody,dashboardHeader)


if (interactive()){

  ui <- dashboardPage(
    dashboardHeader(title = "Creates model Test"),
    dashboardSidebar(),
    dashboardBody(
      fluidPage(
        fluidRow(
      DrawPCAUI2("PCA1")
    ))
    )
  )

  server <- function(input, output, session) {


    metadata_path <- system.file("extdata", "metadata.csv", package = "BioshinyModules")
    counts_path <- system.file("extdata", "rawcounts.csv", package = "BioshinyModules")



    metadata <- reactiveValues(table = read.table(metadata_path, header = TRUE, sep = ",",
                                                  row.names = 1)
    )
    counts <- reactiveValues(table = read.table(counts_path, header = TRUE, sep = ",",
                                                row.names = 1)
    )

    observe({
    PCA <- callModule(DrawPCAServer2,"PCA1",
                      matrix = counts ,
                      metadata = metadata)
    })

  }

  shinyApp(ui, server)
}