Files in bioinfo16/RIPAT
Retroviral Integration Pattern Analysis Tool (RIPAT)
.gitignore
DESCRIPTION
NAMESPACE
R/annoByCGC.R
R/annoByCpG.R
R/annoByGene.R
R/annoByRepeat.R
R/annoByVar.R
R/blast_gene.R
R/blast_obj.R
R/compareCases.R
R/cpg_exam_db.R
R/drawingKaryo.R
R/gene_exam_db.R
R/integPatternByChr.R
R/makeData.R
R/makeDocument.R
R/makeExpSet.R
R/makeExpSet2.R
R/makeInputObj.R
R/makeInputObj2.R
R/makeRanSet.R
R/micro_exam_db.R
R/ranSetGenerator.R
R/repeat_exam_db.R
R/tss_exam_db.R
R/var_exam_db.R
README.md
data/blast_gene.rda
data/blast_obj.rda
data/cpg_exam_db.rda
data/gene_exam_db.rda
data/micro_exam_db.rda
data/repeat_exam_db.rda
data/tss_exam_db.rda
data/var_exam_db.rda
inst/CITATION
inst/extdata/GRCh37_TSS.rds
inst/extdata/GRCh37_cgc.rds
inst/extdata/GRCh37_chrom.rds
inst/extdata/GRCh37_gene.rds
inst/extdata/GRCh38_TSS.rds
inst/extdata/GRCh38_cgc.rds
inst/extdata/GRCh38_chrom.rds
inst/extdata/GRCh38_gene.rds
inst/scripts/A5_15856M_BLASTn.txt
inst/scripts/test_script.R
man/annoByCGC.Rd
man/annoByCpG.Rd
man/annoByGene.Rd
man/annoByRepeat.Rd
man/annoByVar.Rd
man/blast_gene.Rd
man/blast_obj.Rd
man/compareCases.Rd
man/cpg_exam_db.Rd
man/drawingKaryo.Rd
man/gene_exam_db.Rd
man/integPatternByChr.Rd
man/makeData.Rd
man/makeDocument.Rd
man/makeExpSet.Rd
man/makeExpSet2.Rd
man/makeInputObj.Rd
man/makeInputObj2.Rd
man/makeRanSet.Rd
man/micro_exam_db.Rd
man/ranSetGenerator.Rd
man/repeat_exam_db.Rd
man/tss_exam_db.Rd
man/var_exam_db.Rd
vignettes/RIPAT_manual_v1.0.0.Rmd
vignettes/blast_result.txt
vignettes/db_structure.png
vignettes/input_contents_table.PNG
